diff --git a/python/paddle/fluid/layers/control_flow.py b/python/paddle/fluid/layers/control_flow.py
index 138e968a0b385b471e899a9280aa92b4226ac9e1..785a3e6eac132bad68bceb6308434e9139f09cae 100755
--- a/python/paddle/fluid/layers/control_flow.py
+++ b/python/paddle/fluid/layers/control_flow.py
@@ -974,6 +974,19 @@ def get_inputs_outputs_in_block(current_block, inner_inputs, inner_outputs,
     :return: inner_inputs, inner_outputs
     """
 
+    def is_ignore_vars(op, var_name):
+        # NOTE(dev): There are some persistable var created in some non-standard API
+        # such as "contrib.layers.shuffle_batch". It create a "Seed" used both in
+        # Input and Output. This var shall not be considered as a loop_var in
+        # control_flow.
+        IGNORE_VAR_NAMES = {"shuffle_batch": ["shuffle_batch_seed"]}
+        if op.type in IGNORE_VAR_NAMES:
+            var_names = IGNORE_VAR_NAMES[op.type]
+            for name in var_names:
+                if name in var_name:
+                    return True
+        return False
+
     # Step1: update inner_inputs and inner_outputs
     # NOTE: Here assumes that all variables are input or output of Ops,
     # but some variables are created without appendding a real op.
@@ -982,7 +995,8 @@ def get_inputs_outputs_in_block(current_block, inner_inputs, inner_outputs,
         assert isinstance(op, Operator)
         for iname in op.input_names:
             for in_var_name in op.input(iname):
-                if in_var_name not in inner_outputs:
+                if in_var_name not in inner_outputs and not is_ignore_vars(
+                        op, in_var_name):
                     inner_inputs.add(in_var_name)
 
         for oname in op.output_names:
diff --git a/python/paddle/fluid/tests/unittests/test_while_op.py b/python/paddle/fluid/tests/unittests/test_while_op.py
index d6d52b7d604aaed0105e389e79d5eee737062989..8af9a39634fdbd8efe09af49ae4315a97849a7b9 100644
--- a/python/paddle/fluid/tests/unittests/test_while_op.py
+++ b/python/paddle/fluid/tests/unittests/test_while_op.py
@@ -137,5 +137,44 @@ class BadInputTest(unittest.TestCase):
             self.assertRaises(TypeError, test_bad_x)
 
 
+class TestIgnoreVarNameInWhile(unittest.TestCase):
+    def test_ignore_var(self):
+        def cond(i, ten, temp, y):
+            return i < ten
+
+        def body_func(i, ten, batch_info, origin_seq):
+            print(batch_info)
+            batch_info = fluid.contrib.layers.shuffle_batch(batch_info)
+            print(batch_info)
+            i = i + 1
+            return [i, ten, batch_info, origin_seq]
+
+        x = fluid.layers.data(name='x', shape=[-1, 1, 4])
+        y = fluid.layers.data(name='y', shape=[-1, 1, 1])
+        temp = layers.concat(input=[x, y], axis=-1)
+        i = layers.fill_constant(shape=[1], value=0, dtype='int32')
+        num = layers.fill_constant(shape=[1], value=5, dtype='int32')
+
+        i, ten, shuffle_temp, y = layers.while_loop(cond, body_func,
+                                                    [i, num, temp, y])
+
+        output = shuffle_temp
+
+        exe = fluid.Executor(fluid.CPUPlace())
+        exe.run(fluid.default_startup_program())
+
+        input_x = numpy.array([[1, 2, 3, 4], [4, 5, 6, 7], [7, 8, 9, 10]])
+        input_x = input_x.reshape(3, 1, 4)
+        input_y = numpy.array([[10], [12], [33]])
+        input_y = input_y.reshape(3, 1, 1)
+
+        res, = exe.run(fluid.default_main_program(),
+                       feed={'x': input_x,
+                             'y': input_y},
+                       fetch_list=[output])
+
+        self.assertListEqual(list(res.shape), [3, 1, 5])
+
+
 if __name__ == '__main__':
     unittest.main()