# Copyright (c) 2020 PaddlePaddle Authors. All Rights Reserved. # # Licensed under the Apache License, Version 2.0 (the "License"); # you may not use this file except in compliance with the License. # You may obtain a copy of the License at # # http://www.apache.org/licenses/LICENSE-2.0 # # Unless required by applicable law or agreed to in writing, software # distributed under the License is distributed on an "AS IS" BASIS, # WITHOUT WARRANTIES OR CONDITIONS OF ANY KIND, either express or implied. # See the License for the specific language governing permissions and # limitations under the License. import os import six import sys import time import signal import numbers import logging import itertools import threading import numpy as np import multiprocessing from collections import namedtuple # NOTE: queue has a different name in python2 and python3 if six.PY2: import Queue as queue else: import queue import paddle from .. import core, layers from ..framework import in_dygraph_mode from ..multiprocess_utils import CleanupFuncRegistrar, _cleanup_mmap, _set_SIGCHLD_handler from .fetcher import _IterableDatasetFetcher, _MapDatasetFetcher from .batch_sampler import _InfiniteIterableSampler __all__ = ['get_worker_info'] # multi-process worker check indices queue interval, avoid # hanging in subprocess data loading MP_INDICES_CHECK_INTERVAL = 5 _IterableDatasetStopIteration = namedtuple('_IterableDatasetStopIteration', ['worker_id']) def default_collate_fn(batch): """ Default batch collating function for :code:`fluid.io.DataLoader`, batch should be a list of samples, and each sample should be a list of fields as follows: [[filed1, filed2, ...], [filed1, filed2, ...], ...] This default collate function zipped each filed together and stack each filed as the batch field as follows: [batch_filed1, batch_filed2, ...] Args: batch(list of list of numpy array): the batch data, each fields should be a numpy array, each sample should be a list of fileds, and batch should be a list of sample. Returns: a list of numpy array: collated batch """ sample = batch[0] # dataset has only 1 field if isinstance(sample, np.ndarray): return [np.stack(batch, axis=0)] # batch each field slots = [] for items in batch: for i, item in enumerate(items): if len(slots) < len(items): slots.append([item]) else: slots[i].append(item) outputs = [] for slot in slots: if isinstance(slot[0], (np.ndarray, np.bool, numbers.Number)): tmp = np.stack(slot, axis=0) outputs.append(tmp) elif isinstance(slot[0], paddle.Tensor): tmp = layers.stack(slot, axis=0) outputs.append(tmp) else: raise RuntimeError("Unknown data type {}".format(type(slot[0]))) return outputs class _DatasetKind(object): MAP = 0 ITER = 1 @staticmethod def create_fetcher(kind, dataset, auto_collate_batch, collate_fn, drop_last): if kind == _DatasetKind.MAP: return _MapDatasetFetcher(dataset, auto_collate_batch, collate_fn, drop_last) elif kind == _DatasetKind.ITER: return _IterableDatasetFetcher(dataset, auto_collate_batch, collate_fn, drop_last) else: raise NotImplementedError("unknown Dataset kind {}".format(kind)) class ParentWatchDog(object): def __init__(self): self._parent_pid = os.getppid() self._parent_alive = True def is_alive(self): if self._parent_alive: self._parent_alive = os.getppid() == self._parent_pid return self._parent_alive # worker information for each workers, used for splitting data copy # for IteratorDataset in worker processes. _worker_info = None def get_worker_info(): """ Get DataLoader worker process information function, this function is used to split data copy in worker process for IterableDataset (see :code:`paddle.io.IterableDataset`), worker information contains following fields: :attr:`num_workers`: total worker process number, see `paddle.io.DataLoader` :attr:`id`: the worker processs id, count from 0 to :attr:`num_workers - 1` :attr:`dataset`: the dataset object in this worker process Returns: WorkerInfo: an instance of WorkerInfo which contains fields above. .. note:: For mode usage and exampls, please see :code:`paddle.io.IterableDataset` Example: .. code-block:: python import math import numpy as np import paddle.fluid as fluid from paddle.io import IterableDataset, DataLoader, get_worker_info class SplitedIterableDataset(IterableDataset): def __init__(self, start, end): self.start = start self.end = end def __iter__(self): worker_info = get_worker_info() if worker_info is None: iter_start = self.start iter_end = self.end else: per_worker = int( math.ceil((self.end - self.start) / float( worker_info.num_workers))) worker_id = worker_info.id iter_start = self.start + worker_id * per_worker iter_end = min(iter_start + per_worker, self.end) for i in range(iter_start, iter_end): yield np.array([i]) place = fluid.CPUPlace() with fluid.dygraph.guard(place): dataset = SplitedIterableDataset(start=2, end=9) dataloader = DataLoader( dataset, places=place, num_workers=2, batch_size=1, drop_last=True) print(list(dataloader)) # outputs: [2, 5, 3, 6, 4, 7] """ return _worker_info class WorkerInfo(object): __initialized = False def __init__(self, **kwargs): for k, v in kwargs.items(): setattr(self, k, v) self.__initialized = True def __setattr__(self, key, val): if self.__initialized: raise RuntimeError("Cannot assign attributes to {} objects".format( self.__class__.__name__)) return super(WorkerInfo, self).__setattr__(key, val) class _DataLoaderIterBase(object): """ Iterator implement of DataLoader, will load and feed mini-batch data by setting in given dataloader. Args: loader(instance of DataLoader): instance of `fluid.io.DataLoader` """ def __init__(self, loader): self._dataset = loader.dataset self._feed_list = loader.feed_list or [] self._places = loader.places self._return_list = loader.return_list self._batch_sampler = loader.batch_sampler self._auto_collate_batch = loader.auto_collate_batch self._num_workers = loader.num_workers self._use_buffer_reader = loader.use_buffer_reader self._use_shared_memory = loader.use_shared_memory self._timeout = loader.timeout if loader.timeout > 0 else MP_INDICES_CHECK_INTERVAL self._worker_init_fn = loader.worker_init_fn self._dataset_kind = loader.dataset_kind self._pin_memory = loader.pin_memory if self._auto_collate_batch: self._sampler_iter = iter(loader.batch_sampler) self._collate_fn = loader.collate_fn or default_collate_fn else: if self._dataset_kind == _DatasetKind.MAP: self._sampler_iter = iter(list(range(len(self._dataset)))) else: self._sampler_iter = iter( _InfiniteIterableSampler(self._dataset, 1)) self._collate_fn = loader.collate_fn # LoDTensorBlockingQueue instance for create_py_reader and a thread # to put mini-batch data to self._blocking_queue, mini-batch data # will be get from: # 1. multi-process mode: get data from workers' result queue # 2. single-process mode: read mini-batch data in main process self._blocking_queue = None self._thread = None self._thread_done_event = threading.Event() def __iter__(self): return self def __len__(self): return len(self._batch_sampler) class _DataLoaderIterSingleProcess(_DataLoaderIterBase): """ Single process implement of DataLoaderIter, loading data from loader.data in main process """ def __init__(self, loader): super(_DataLoaderIterSingleProcess, self).__init__(loader) self._dataset_fetcher = _DatasetKind.create_fetcher( self._dataset_kind, self._dataset, self._auto_collate_batch, self._collate_fn, True) # NOTE: len(self._places) batch data compose as an output # iteration, set blocking_queue can cache 2 iteration datas # at most here self._blocking_queue_capacity = 2 * len(self._places) self._init_thread() def _init_thread(self): self._var_names = [v.name for v in self._feed_list] self._shapes = [v.shape for v in self._feed_list] self._dtypes = [v.dtype for v in self._feed_list] self._need_check_feed = [ v.desc.need_check_feed() for v in self._feed_list ] # if only 1 place, do not need to keep order self._blocking_queue = core.init_lod_tensor_blocking_queue( core.Variable(), self._blocking_queue_capacity, len(self._places) > 1) self._reader = core.create_py_reader( self._blocking_queue, self._var_names, self._shapes, self._dtypes, self._need_check_feed, self._places, self._use_buffer_reader, True, self._pin_memory) self._thread = threading.Thread(target=self._thread_loop) self._thread.daemon = True self._thread.start() def _thread_loop(self): try: for indices in self._sampler_iter: # read data from dataset in mini-batch batch = self._dataset_fetcher.fetch(indices) # pack as LoDTensorArray array = core.LoDTensorArray() for slot in batch: if not isinstance(slot, core.LoDTensor): self._check_input_array(slot) # FIXME(dkp): blocking_queue only support # core.LoDTensorArray as input now, read # numpy data into a LoDTensorArray here, # should support paddle.Tensor list later if isinstance(slot, paddle.Tensor): slot = slot.numpy() tmp = core.LoDTensor() tmp.set(slot, core.CPUPlace()) slot = tmp array.append(slot) if not self._blocking_queue.push(array): break self._blocking_queue.close() self._thread = None except StopIteration: self._blocking_queue.close() except Exception: self._blocking_queue.kill() self._thread = None logging.warning("DataLoader reader thread raised an exception.") six.reraise(*sys.exc_info()) @classmethod def _check_input_array(cls, item): if isinstance(item, paddle.Tensor): return arr = np.array(item) if arr.dtype == np.object: raise TypeError(( "\n\tFaild to convert input data to a regular ndarray :\n\t* Usually " "this means the input data contains nested lists with different lengths. " "\n\t* Check the reader function passed to 'decorate_batch_generator'" " to locate the data causes this issue.\n\t* Please consider using " "'fluid.create_lod_tensor' to convert it to a LoD-Tensor.")) def __next__(self): try: if in_dygraph_mode(): return self._reader.read_next_var_list() else: if self._return_list: # static graph organized data on multi-device with list, if # place number is 1, there is only 1 device, extra the data # from list for devices to be compatible with dygraph mode if len(self._places) == 1: return self._reader.read_next_list()[0] else: return self._reader.read_next_list() else: return self._reader.read_next() except StopIteration: self._reader.reset() six.reraise(*sys.exc_info()) # python2 compatibility def next(self): return self.__next__() def __del__(self): # _blocking_queue in keep order mode holds sub-threads # need to release thread resources on unexpected exit if self._blocking_queue: self._blocking_queue.close() # NOTE(chenweihang): _worker_loop must be top level method to be pickled def _worker_loop(dataset, dataset_kind, indices_queue, out_queue, done_event, auto_collate_batch, collate_fn, init_fn, worker_id, num_workers, use_shared_memory): try: # NOTE: [ mmap files clear ] When the child process exits unexpectedly, # some shared memory objects may have been applied for but have not yet # been put into the inter-process Queue. This part of the object needs # to be cleaned up when the process ends. CleanupFuncRegistrar.register(_cleanup_mmap) # set signal handler core._set_process_signal_handler() global _worker_info _worker_info = WorkerInfo( id=worker_id, num_workers=num_workers, dataset=dataset) init_exception = None try: if init_fn is not None: init_fn(worker_id) fetcher = _DatasetKind.create_fetcher( dataset_kind, dataset, auto_collate_batch, collate_fn, True) except: init_exception = Exception("init_fn failed in worker {}: " \ "{}".format(worker_id, sys.exc_info())) iterator_drained = False parent_watch_dog = ParentWatchDog() while parent_watch_dog.is_alive(): try: data = indices_queue.get(MP_INDICES_CHECK_INTERVAL) except queue.Empty: continue # None as poison piil, so worker event should be set if data is None: assert done_event.is_set() or iterator_drained, \ "get None when worker done_event set" break # If worker done event is set but get still get data in # indices_queue, remaining data should be get and skipped. if done_event.is_set() or iterator_drained: continue idx, indices = data try: if init_exception is not None: batch = init_exception init_exception = None else: batch = fetcher.fetch(indices) except Exception as e: if isinstance( e, StopIteration) and dataset_kind == _DatasetKind.ITER: out_queue.put(_IterableDatasetStopIteration(worker_id)) iterator_drained = True else: out_queue.put((idx, e)) else: if use_shared_memory: # FIXME(dkp): _convert_to_tensor_list only support np.array # list now, should support paddle.Tensor list if isinstance(batch[0][0], paddle.Tensor): np_batch = [] for sample in batch: np_batch.append([s.numpy() for s in sample]) batch = np_batch tensor_list = core._convert_to_tensor_list(batch) out_queue.put((idx, tensor_list)) core._remove_tensor_list_mmap_fds(tensor_list) else: out_queue.put((idx, batch)) except KeyboardInterrupt: # NOTE: Main process will raise KeyboardInterrupt anyways, ignore it in child process pass except: six.reraise(*sys.exc_info()) finally: if use_shared_memory: _cleanup_mmap() class _DataLoaderIterMultiProcess(_DataLoaderIterBase): def __init__(self, loader): super(_DataLoaderIterMultiProcess, self).__init__(loader) assert self._num_workers > 0, "Multi-process DataLoader " \ "invalid num_workers({})".format(self._num_workers) # subprocess wrokers' result queue self._data_queue = None # data get from _data_queue will be reordered by _rcvd_idx # for data order keeping, data index not equal _rcvd_idx # will be cached in _task_infos self._send_idx = 0 self._rcvd_idx = 0 self._batches_outstanding = 0 self._task_infos = {} # indices outstand as _outstanding_capacity at first, and # blocking_queue capacity is also _outstanding_capacity. # _outstanding_capacity here to make sure each indices_queue # has at least 2 indices, and outstanding batch cached # output data for at least 2 iterations(Note that len(_places) # batches will be composed as an iteration output) self._outstanding_capacity = 2 * max(self._num_workers, len(self._places)) # see _try_put_indices self._thread_lock = threading.Lock() # init workers and indices queues and put 2 indices in each indices queue self._init_workers() for _ in range(self._outstanding_capacity): self._try_put_indices() self._init_thread() self._shutdown = False def _init_workers(self): # multiprocess worker and indice queue list initial as empty self._workers = [] self._worker_status = [] self._indices_queues = [] self._workers_idx_cycle = itertools.cycle(range(self._num_workers)) # create data_queue for workers self._data_queue = multiprocessing.Queue() # event for workers and thread, thread event is only need # in multi-processing mode self._workers_done_event = multiprocessing.Event() self._thread_done_event = threading.Event() for i in range(self._num_workers): indices_queue = multiprocessing.Queue() self._indices_queues.append(indices_queue) worker = multiprocessing.Process( target=_worker_loop, args=(self._dataset, self._dataset_kind, indices_queue, self._data_queue, self._workers_done_event, self._auto_collate_batch, self._collate_fn, self._worker_init_fn, i, self._num_workers, self._use_shared_memory)) worker.daemon = True worker.start() self._workers.append(worker) self._worker_status.append(True) core._set_process_pids(id(self), tuple(w.pid for w in self._workers)) _set_SIGCHLD_handler() def _clear_and_remove_data_queue(self): if self._data_queue is not None: while True: try: self._data_queue.get_nowait() except: self._data_queue.cancel_join_thread() self._data_queue.close() break def _init_thread(self): self._var_names = [v.name for v in self._feed_list] self._shapes = [v.shape for v in self._feed_list] self._dtypes = [v.dtype for v in self._feed_list] self._need_check_feed = [ v.desc.need_check_feed() for v in self._feed_list ] # if only 1 place, do not need to keep order self._blocking_queue = core.init_lod_tensor_blocking_queue( core.Variable(), self._outstanding_capacity, len(self._places) > 1) self._reader = core.create_py_reader( self._blocking_queue, self._var_names, self._shapes, self._dtypes, self._need_check_feed, self._places, self._use_buffer_reader, True, self._pin_memory) self._thread_done_event = threading.Event() self._thread = threading.Thread(target=self._thread_loop) self._thread.daemon = True self._thread.start() def _shutdown_worker(self, worker_id): if self._worker_status[worker_id]: self._indices_queues[worker_id].put(None) self._worker_status[worker_id] = False def _try_shutdown_all(self): if not self._shutdown: try: self._exit_thread_expectedly() self._clear_and_remove_data_queue() # set _workers_done_event should be set before put None # to indices_queue, workers wll exit on reading None from # indices_queue self._workers_done_event.set() for i in range(self._num_workers): self._shutdown_worker(i) for w in self._workers: w.join() for q in self._indices_queues: q.cancel_join_thread() q.close() finally: core._erase_process_pids(id(self)) self._shutdown = True def _exit_thread_expectedly(self): self._thread_done_event.set() self._blocking_queue.close() def _exit_thread_unexpectedly(self): self._thread_done_event.set() self._blocking_queue.kill() logging.error("DataLoader reader thread raised an exception!") def _thread_loop(self): while not self._thread_done_event.is_set(): batch = self._get_data() if not self._thread_done_event.is_set(): if batch is None: self._exit_thread_expectedly() elif isinstance(batch, Exception): self._exit_thread_unexpectedly() else: try: # pack as LoDTensorArray array = core.LoDTensorArray() if self._use_shared_memory: for tensor in batch: array.append(tensor) else: # LoDTensor not in shared memory is not # serializable, cannot be create in workers for slot in batch: if not isinstance(slot, core.LoDTensor): tmp = core.LoDTensor() tmp.set(slot, core.CPUPlace()) slot = tmp array.append(slot) if not self._blocking_queue.push(array): self._blocking_queue.close() except: self._exit_thread_unexpectedly() six.reraise(*sys.exc_info()) finally: self._rcvd_idx += 1 def _get_data(self): while not self._thread_done_event.is_set(): # For IterableDataset, batch indices is generated infinitely # for each worker to raise StopIteration, but a StopIteration # raising process will discard a batch indices which is count # in _send_idx but will not increase _rcvd_idx, so we check # whether the worker is still alive here to skip the discarded # batch indices and increase _rcvd_idx if self._dataset_kind == _DatasetKind.ITER: while self._rcvd_idx < self._send_idx: info = self._task_infos[self._rcvd_idx] if len(info) == 2 or self._worker_status[info[0]]: break del self._task_infos[self._rcvd_idx] self._rcvd_idx += 1 self._batches_outstanding -= 1 else: # NOTE: _rcvd_idx and _send_idx only record batches among # workers, if batches among workers drained, there # may also be data in blocking queue if self._batches_outstanding < len(self._places): return None continue if self._rcvd_idx in self._task_infos and \ len(self._task_infos[self._rcvd_idx]) == 2: return self._task_infos.pop(self._rcvd_idx)[1] try: # [ avoid hang ]: main process may blocking at _reader.read_next when # KeyboardInterrupt, we do following tradeoff: # 1. get data with timeout, MP_INDICES_CHECK_INTERVAL(5s) as timeout # default, if KeyboardInterrupt blocking, failed workers will be # checked and raise RuntimeError to quit DataLoader in timeout # exception handling. # 2. if get data timeout and check workers all alive, continue to # get data again data = self._data_queue.get(timeout=self._timeout) except Exception as e: # check if thread done event set when waiting data if self._thread_done_event.is_set(): continue # check failed workers failed_workers = [] for i, w in enumerate(self._workers): if self._worker_status[i] and not w.is_alive(): failed_workers.append(w) self._shutdown_worker(i) if len(failed_workers) > 0: self._exit_thread_unexpectedly() pids = ', '.join(str(w.pid) for w in failed_workers) raise RuntimeError("DataLoader {} workers exit unexpectedly, " \ "pids: {}".format(len(failed_workers), pids)) # get(timeout) will call _poll(timeout) and may raise IOError if isinstance(e, queue.Empty) or isinstance(e, IOError): # continue on timeout to keep getting data from queue continue self._exit_thread_unexpectedly() logging.error("DataLoader reader thread failed({}) to read data from " \ "workers' result queue.".format(e)) six.reraise(*sys.exc_info()) else: if self._dataset_kind == _DatasetKind.ITER and isinstance( data, _IterableDatasetStopIteration): # if a worker get StopIteraion, we shutdown this worker, # note that this batch indices to trigger StopIteration # is discard, outstanding batch number should be decrease # and another indices should be put for other workers # may still working. self._shutdown_worker(data.worker_id) self._batches_outstanding -= 1 self._try_put_indices() continue idx, batch = data if idx == self._rcvd_idx: del self._task_infos[idx] return batch else: self._task_infos[idx] += (batch, ) continue def _try_put_indices(self): assert self._batches_outstanding <= self._outstanding_capacity, \ "too many indices have been put to queue" # In multi-process mode for IterableDataset, _try_put_indices will # be called both in main process(for our implement has blocking queue, # and blocking queue read is in main process) and thread, which may # cause error following error # 1. "ValueError: generator already executing" in next(self._sampler_iter) # 2. re-enter in increase _send_idx # add a lock for threading save, for _try_put_indices is only a slight # function which is not in data reading pipeline, this lock almost no # influence on performance with self._thread_lock: try: indices = next(self._sampler_iter) except StopIteration: return for i in range(self._num_workers): worker_idx = next(self._workers_idx_cycle) if self._worker_status[worker_idx]: break else: return self._indices_queues[worker_idx].put((self._send_idx, indices)) self._task_infos[self._send_idx] = (worker_idx, ) self._batches_outstanding += 1 self._send_idx += 1 def __del__(self): self._try_shutdown_all() def __next__(self): try: # _batches_outstanding here record the total batch data number # in 'from after _try_put_indices to beforeoutput data', this # value should be _outstanding_capacity if data is not drained, # if _batches_outstanding is less than _places number, there are # no enough data to generate next output, close blocking_queue and # set _thread_done_event here, py_reader will raise StopIteration, # end workers and indices_queues in StopIteration handling if self._batches_outstanding < len(self._places): self._thread_done_event.set() self._blocking_queue.close() if in_dygraph_mode(): data = self._reader.read_next_var_list() else: if self._return_list: data = self._reader.read_next_list() # static graph organized data on multi-device with list, if # place number is 1, there is only 1 device, extra the data # from list for devices to be compatible with dygraph mode if len(self._places) == 1: data = data[0] else: data = self._reader.read_next() self._on_output_batch() return data except StopIteration: self._reader.reset() self._try_shutdown_all() six.reraise(*sys.exc_info()) # python2 compatibility def next(self): return self.__next__() def _on_output_batch(self): for _ in range(len(self._places)): self._batches_outstanding -= 1 self._try_put_indices()