diff --git a/.travis.yml b/.travis.yml
index 7de4ec7fc511832998cd0dc053645e52136042b8..5b14f8e61e6143bb22a3aad5e0a9b11688b1b4be 100644
--- a/.travis.yml
+++ b/.travis.yml
@@ -29,10 +29,6 @@ addons:
       - python-pip
       - python2.7-dev
       - m4
-      - libprotobuf-dev
-      - doxygen
-      - protobuf-compiler
-      - python-protobuf
       - python-numpy
       - python-wheel
       - libgoogle-glog-dev
@@ -43,6 +39,8 @@ addons:
       - graphviz
       - swig
       - clang-format-3.8
+      - automake
+      - libtool
 before_install:
   - |
     if [ ${JOB} == "BUILD_AND_TEST" ]; then
diff --git a/cmake/check_packages.cmake b/cmake/check_packages.cmake
index 4b7cadfc85cd5c5bd9f1ff7e4dc833cf4f438005..afb84c6ff52af05769a99246d2e93380832c04e0 100644
--- a/cmake/check_packages.cmake
+++ b/cmake/check_packages.cmake
@@ -24,7 +24,6 @@ endif()
 
 if(WITH_DOC)
   find_package(Sphinx REQUIRED)
-  find_package(Doxygen REQUIRED)
   find_python_module(recommonmark REQUIRED)
 endif()
 
diff --git a/paddle/scripts/travis/before_install.linux.sh b/paddle/scripts/travis/before_install.linux.sh
index ec2ac1f2240765d1c453ce50ec44286a551a37ba..9620bff6bcf77c6e87f149e8e33408170dd8e507 100755
--- a/paddle/scripts/travis/before_install.linux.sh
+++ b/paddle/scripts/travis/before_install.linux.sh
@@ -1,5 +1,16 @@
 #!/bin/bash
 set -e
+pip install protobuf
+cd /tmp
+wget https://github.com/google/protobuf/archive/v3.0.2.tar.gz -O protobuf.tar.gz
+tar xf protobuf.tar.gz
+cd protobuf*
+./autogen.sh
+./configure --prefix=/usr/
+make -j 2 install
+cd ..
+rm -rf protobuf*
+
 pushd /usr/src/gtest
 cmake .
 make
diff --git a/paddle/scripts/travis/before_install.osx.sh b/paddle/scripts/travis/before_install.osx.sh
index f438e69b822aa45448e1d303bf27af482a3d88d8..bd88ed39132f19ca7cfc4f0dd6acdbc6b83e94ab 100755
--- a/paddle/scripts/travis/before_install.osx.sh
+++ b/paddle/scripts/travis/before_install.osx.sh
@@ -2,9 +2,8 @@
 brew update
 brew tap homebrew/science
 brew install python
-sudo pip install --upgrade protobuf==2.6.0
-brew install homebrew/versions/protobuf260 --without-python
-brew install cmake python glog gflags openblas wget md5sha1sum
+sudo pip install --upgrade protobuf
+brew install cmake python glog gflags openblas wget md5sha1sum protobuf
 
 wget https://github.com/google/googletest/archive/release-1.8.0.tar.gz -O gtest.tar.gz
 tar xf gtest.tar.gz