diff --git a/benchmark/paddle/image/run_mkldnn_infer.sh b/benchmark/paddle/image/run_mkl_infer.sh similarity index 100% rename from benchmark/paddle/image/run_mkldnn_infer.sh rename to benchmark/paddle/image/run_mkl_infer.sh diff --git a/benchmark/paddle/image/run_mkldnn_train.sh b/benchmark/paddle/image/run_mkl_train.sh similarity index 85% rename from benchmark/paddle/image/run_mkldnn_train.sh rename to benchmark/paddle/image/run_mkl_train.sh index 320206239ae960bd088b05d3b10934a98da741b1..5335af5ac1b9a4a48ec107b8b6386b50ead8284c 100755 --- a/benchmark/paddle/image/run_mkldnn_train.sh +++ b/benchmark/paddle/image/run_mkl_train.sh @@ -28,6 +28,10 @@ function train() { --test_period=100 \ --config_args=$args \ 2>&1 | tee ${log} + + avg_time=`tail ${log} -n 1 | awk -F ' ' '{print $8}' | sed 's/avg=//'` + fps=`awk 'BEGIN{printf "%.2f",('$bs' / '$avg_time' * 1000)}'` + echo "FPS: $fps images/sec" 2>&1 | tee -a ${log} } if [ ! -f "train.list" ]; then diff --git a/benchmark/paddle/image/run_openblas_infer.sh b/benchmark/paddle/image/run_openblas_infer.sh new file mode 100755 index 0000000000000000000000000000000000000000..c1001d3a7c95a293d0b2b5b78fb7415e167b3e9f --- /dev/null +++ b/benchmark/paddle/image/run_openblas_infer.sh @@ -0,0 +1,62 @@ +set -e + +function clock_to_seconds() { + hours=`echo $1 | awk -F ':' '{print $1}'` + mins=`echo $1 | awk -F ':' '{print $2}'` + secs=`echo $1 | awk -F ':' '{print $3}'` + echo `awk 'BEGIN{printf "%.2f",('$secs' + '$mins' * 60 + '$hours' * 3600)}'` +} + +function infer() { + unset OMP_NUM_THREADS MKL_NUM_THREADS OMP_DYNAMIC KMP_AFFINITY + topology=$1 + layer_num=$2 + bs=$3 + thread=`nproc` + if [ $thread -gt $bs ]; then + thread=$bs + fi + log="logs/infer-${topology}-${layer_num}-${thread}openblas-${bs}.log" + + models_in="models/${topology}-${layer_num}/pass-00000/" + if [ ! -d $models_in ]; then + echo "./run_mkl_infer.sh to save the model first" + exit 0 + fi + log_period=$((256 / bs)) + paddle train --job=test \ + --config="${topology}.py" \ + --use_gpu=False \ + --trainer_count=$thread \ + --log_period=$log_period \ + --config_args="batch_size=${bs},layer_num=${layer_num},is_infer=True" \ + --init_model_path=$models_in \ + 2>&1 | tee ${log} + + # calculate the last 5 logs period time of 1280 samples, + # the time before are burning time. + start=`tail ${log} -n 7 | head -n 1 | awk -F ' ' '{print $2}' | xargs` + end=`tail ${log} -n 2 | head -n 1 | awk -F ' ' '{print $2}' | xargs` + start_sec=`clock_to_seconds $start` + end_sec=`clock_to_seconds $end` + fps=`awk 'BEGIN{printf "%.2f",(1280 / ('$end_sec' - '$start_sec'))}'` + echo "Last 1280 samples start: ${start}(${start_sec} sec), end: ${end}(${end_sec} sec;" >> ${log} + echo "FPS: $fps images/sec" 2>&1 | tee -a ${log} +} + +if [ ! -f "train.list" ]; then + echo " " > train.list +fi +if [ ! -f "test.list" ]; then + echo " " > test.list +fi +if [ ! -d "logs" ]; then + mkdir logs +fi + +# inference benchmark +for batchsize in 1 2 4 8 16; do + infer googlenet v1 $batchsize + infer resnet 50 $batchsize + infer vgg 19 $batchsize +done diff --git a/benchmark/paddle/image/run_openblas_train.sh b/benchmark/paddle/image/run_openblas_train.sh new file mode 100755 index 0000000000000000000000000000000000000000..b9494ce119523953a3360b2b67e2cb6f3e0f1643 --- /dev/null +++ b/benchmark/paddle/image/run_openblas_train.sh @@ -0,0 +1,39 @@ +set -e + +function train() { + unset OMP_NUM_THREADS MKL_NUM_THREADS OMP_DYNAMIC KMP_AFFINITY + topology=$1 + layer_num=$2 + bs=$3 + thread=`nproc` + # each trainer_count use only 1 core to avoid conflict + log="logs/train-${topology}-${layer_num}-${thread}openblas-${bs}.log" + args="batch_size=${bs},layer_num=${layer_num}" + config="${topology}.py" + paddle train --job=time \ + --config=$config \ + --use_gpu=False \ + --trainer_count=$thread \ + --log_period=10 \ + --test_period=100 \ + --config_args=$args \ + 2>&1 | tee ${log} + + avg_time=`tail ${log} -n 1 | awk -F ' ' '{print $8}' | sed 's/avg=//'` + fps=`awk 'BEGIN{printf "%.2f",('$bs' / '$avg_time' * 1000)}'` + echo "FPS: $fps images/sec" 2>&1 | tee -a ${log} +} + +if [ ! -f "train.list" ]; then + echo " " > train.list +fi +if [ ! -d "logs" ]; then + mkdir logs +fi + +# training benchmark +for batchsize in 64 128 256; do + train vgg 19 $batchsize + train resnet 50 $batchsize + train googlenet v1 $batchsize +done diff --git a/doc/api/v2/fluid/layers.rst b/doc/api/v2/fluid/layers.rst index 0ab36402fa5acde2ca09d16af9105d2d5fde417a..d2bb7a8187ba7f1ae78a5337794a8882c96d2346 100644 --- a/doc/api/v2/fluid/layers.rst +++ b/doc/api/v2/fluid/layers.rst @@ -295,6 +295,12 @@ conv2d_transpose :noindex: +sequence_expand +--------- +.. autofunction:: paddle.v2.fluid.layers.sequence_expand + :noindex: + + lstm_unit --------- .. autofunction:: paddle.v2.fluid.layers.lstm_unit diff --git a/doc/design/executor.md b/doc/design/executor.md index b5fb6c5c3c1da3c112ce63878322083dd5c42b70..aa738ab59859c800e3ba2b2cad48203ce9f5db48 100644 --- a/doc/design/executor.md +++ b/doc/design/executor.md @@ -1,23 +1,27 @@ # Executor Design Doc ## Motivation +In the [fluid](https://github.com/PaddlePaddle/Paddle/blob/develop/doc/design/fluid.md), we encourage user use deep learning programming paradigms to describe training process. When the user-written Python program is executed, it will create a protobuf message +[`ProgramDesc`](https://github.com/PaddlePaddle/Paddle/blob/a91efdde6910ce92a78e3aa7157412c4c88d9ee8/paddle/framework/framework.proto#L145) that describes the process and is conceptually like an [abstract syntax tree](https://en.wikipedia.org/wiki/Abstract_syntax_tree). -We use executor to do the runtime evaluation of a `ProgramDesc`. +The executor runs the `ProgramDesc` like an interpreter. `ProgramDesc` contains intrinsics/operators and variables which will be used, executor explicitly execute the stored precompiled code. ## Overview An executor takes a `ProgramDesc`, a `block_id` and a `Scope`. The `ProgramDesc` is a list of blocks and each block contains the protobuf definition of all the parameters and operators. The `block_id` specifies the entrance block. And the `Scope` is the container of all the variable instance, which is persistent throughout different runs. -### What does executor do? +## Executor -It evaluates all the operators in the `block_id`th block of a `ProgramDesc`. +`Executor` explicitly executes all the intrinsics/operators in the `block_id`th block of a `ProgramDesc`. Essentially, it instantiates Variables and Operators, then runs all the operators in sequence. It is very similar to push stack frame when entering the block, it will destroy the temporary variables when mini-batch is finished, but it does not have stack frame pop process. -### What does executor NOT do? +### Interface +```c++ + Executor(places); +``` +A executor does not own any computing resources, user can only construct an executor with specified places. -It does not do runtime optimization, meaning intelligently parse the dependency of each op a choose which one to be run and in which order they should be run. -It does not do graph partitioning, meaning dividing the `ProgramDesc` into several small pieces and executing them on different devices. - -## Implementation - -`Executor` evaluates a `ProgramDesc`. Essentially, it instantiates Variables and Operators, then run all the operators in sequence. [[code]](https://github.com/PaddlePaddle/Paddle/blob/develop/paddle/framework/executor.cc) +``` + void Run(ProgramDesc, Scope, block_id, create_local_scope); +``` +A executor only provides an unified way to execute `ProgramDesc`. `ProgramDesc` is the target will be executed, scope specifies the variable container. `block_id` indicates the entrance block, `create_local_scope` means if it will destroy the temporary variables after execution finished. diff --git a/doc/design/mkl/mkl_packed.md b/doc/design/mkl/mkl_packed.md index c07f7d0cbe9942e626bddbc37477e84e135f8e49..0123315ad4368e68b377f66119949bfd6c1c7860 100644 --- a/doc/design/mkl/mkl_packed.md +++ b/doc/design/mkl/mkl_packed.md @@ -30,10 +30,10 @@ 由于在现有的某些情况下(例如RNN),多次调用 cblas_?gemm 会使用相同的原数据,因此,每次调用时对原数据的重复Packing便成为了冗余。 为了最大程度减少多次调用 cblas_?gemm 在Packing上的耗时,Intel® MKL 引入了以下四个API: - * cblas_?gemm_alloc - * cblas_?gemm_pack - * cblas_?gemm_compute - * cblas_?gemm_free + * [cblas_?gemm_alloc](https://software.intel.com/en-us/mkl-developer-reference-c-cblas-gemm-alloc) + * [cblas_?gemm_pack](https://software.intel.com/en-us/mkl-developer-reference-c-cblas-gemm-pack) + * [cblas_?gemm_compute](https://software.intel.com/en-us/mkl-developer-reference-c-cblas-gemm-compute) + * [cblas_?gemm_free](https://software.intel.com/en-us/mkl-developer-reference-c-cblas-gemm-free) 通过使用这些API,我们可以先完成对原数据的Packing操作,再把已转换为Packed格式的数据传递给那些复用同一数据的gemm_compute函数,从而避免了Packing冗余。 @@ -84,7 +84,20 @@ PaddlePaddle/Paddle 2. 对比优化后layer与相对应的PaddlePaddle原有layer, 在batch mode下的结果。 ### Python API -TBD +计划在`paddle/utils.Flags`中添加`use_mkl_packed`的flag,用于选择是否使用相关功能,并且当编译时`WITH_MKL=ON`的情况下,默认设置为`true`。 + +同时,在`python/paddle/trainer/config_parser.py`中对应的layer处,添加`use_mkl_packed`这个选择,方便用户在Python端选择是否启用这个功能。 + +具体实现方式比如: + +```python +use_mkl_packed = bool(int(g_command_config_args.get("use_mkl_packed", 0))) +if use_mkl_packed: + self.layer_type = mkl_packed_* +``` + +所有相关的`layer_type`会以*mkl_packed_*开头,这些会在`MKLPacked*Layer`注册layer的时候保证,以示区分。 + ### Benchmarking 会添加相应的脚本用于测试和对比在使用MKL Packed recurrent layers 前后的网络性能。 diff --git a/doc/howto/index_cn.rst b/doc/howto/index_cn.rst index 991b9e2596a3b499846b963152c838d66260265d..ccd909770253bb85dbc8a5a2560594076c2f68b0 100644 --- a/doc/howto/index_cn.rst +++ b/doc/howto/index_cn.rst @@ -9,9 +9,6 @@ usage/cmd_parameter/index_cn.rst usage/cluster/cluster_train_cn.md - usage/k8s/k8s_basis_cn.md - usage/k8s/k8s_cn.md - usage/k8s/k8s_distributed_cn.md 开发标准 -------- diff --git a/doc/howto/index_en.rst b/doc/howto/index_en.rst index 61bf25ccd12eeedffc747fdd4ce84fa4adde07ee..6d1bf7dfc003da6de31410ee0a7959233adfaf76 100644 --- a/doc/howto/index_en.rst +++ b/doc/howto/index_en.rst @@ -9,8 +9,6 @@ Usage usage/cmd_parameter/index_en.rst usage/cluster/cluster_train_en.md - usage/k8s/k8s_en.md - usage/k8s/k8s_aws_en.md Development ------------ diff --git a/doc/howto/usage/cluster/cluster_train_cn.md b/doc/howto/usage/cluster/cluster_train_cn.md index 2e98b3de3fe2284375f87e883ff4bac19255dbeb..c9f90538a669d4705d18c3cd9b6dbf4a535c35b8 100644 --- a/doc/howto/usage/cluster/cluster_train_cn.md +++ b/doc/howto/usage/cluster/cluster_train_cn.md @@ -1,25 +1,8 @@ # PaddlePaddle分布式训练 -* [概述](#概述) -* [环境准备](#环境准备) -* [启动参数说明](#启动参数说明) - * [启动参数服务器](#启动参数服务器) - * [启动计算节点](#启动计算节点) - * [准备数据集](#准备数据集) - * [准备训练程序](#准备训练程序) -* [使用分布式计算平台或工具](#使用分布式计算平台或工具) - * [使用Fabric启动集群作业](#使用fabric启动集群作业) - * [准备一个Linux集群](#准备一个linux集群) - * [启动集群作业](#启动集群作业) - * [终止集群作业](#终止集群作业) - * [检查集群训练结果](#检查集群训练结果) - * [检查模型输出](#检查模型输出) - * [在OpenMPI集群中提交训练作业](#在openmpi集群中提交训练作业) - * [准备OpenMPI集群](#准备OpenMPI集群) - * [启动集群作业](#启动集群作业-1) - * [在Kubernetes集群中提交训练作业](#在kubernetes集群中提交训练作业) ## 概述 + 本文将介绍如何使用PaddlePaddle在不同的集群框架下完成分布式训练。分布式训练架构如下图所示: @@ -32,10 +15,11 @@ 在使用同步SGD训练神经网络时,PaddlePaddle使用同步屏障(barrier),使梯度的提交和参数的更新按照顺序方式执行。在异步SGD中,则并不会等待所有trainer提交梯度才更新参数,这样极大地提高了计算的并行性:参数服务器之间不相互依赖,并行地接收梯度和更新参数,参数服务器也不会等待计算节点全部都提交梯度之后才开始下一步,计算节点之间也不会相互依赖,并行地执行模型的训练。可以看出,虽然异步SGD方式会提高参数更新并行度, 但是并不能保证参数同步更新,在任意时间某一台参数服务器上保存的参数可能比另一台要更新,与同步SGD相比,梯度会有噪声。 + ## 环境准备 1. 准备您的计算集群。计算集群通常由一组(几台到几千台规模)的Linux服务器组成。服务器之间可以通过局域网(LAN)联通,每台服务器具有集群中唯一的IP地址(或者可被DNS解析的主机名)。集群中的每台计算机通常被成为一个“节点”。 -1. 我们需要在集群的所有节点上安装 PaddlePaddle。 如果要启用GPU,还需要在节点上安装对应的GPU驱动以及CUDA。PaddlePaddle的安装可以参考[build_and_install](https://github.com/PaddlePaddle/Paddle/tree/develop/doc/getstarted/build_and_install)的多种安装方式。我们推荐使用[Docker](https://github.com/PaddlePaddle/Paddle/blob/develop/doc/getstarted/build_and_install/docker_install_cn.rst)安装方式来快速安装PaddlePaddle。 +1. 我们需要在集群的所有节点上安装 PaddlePaddle。 如果要启用GPU,还需要在节点上安装对应的GPU驱动以及CUDA。PaddlePaddle的安装可以参考[build_and_install](http://www.paddlepaddle.org/docs/develop/documentation/zh/getstarted/build_and_install/index_cn.html)的多种安装方式。我们推荐使用[Docker](http://www.paddlepaddle.org/docs/develop/documentation/zh/getstarted/build_and_install/docker_install_cn.html)安装方式来快速安装PaddlePaddle。 安装完成之后,执行下面的命令可以查看已经安装的版本(docker安装方式可以进入docker容器执行:`docker run -it paddlepaddle/paddle:[tag] /bin/bash`): ```bash @@ -63,12 +47,12 @@ $ paddle pserver --port=7164 --ports_num=1 --ports_num_for_sparse=1 --num_gradie $ stdbuf -oL /usr/bin/nohup paddle pserver --port=7164 --ports_num=1 --ports_num_for_sparse=1 --num_gradient_servers=1 &> pserver.log ``` -| 参数 | 是否必选 | 默认值 | 说明 | -| ------------- | ------------- | ------------- | ------------- | -| port | 必选 | 7164 | pserver监听的起始端口,根据ports_num决定
总端口个数,从起始端口监听多个端口用于通信 | -| ports_num | 必选 | 1 | 监听的端口个数 | -| ports_num_for_sparse | 必选 | 1 | 用于稀疏类型参数通信的端口个数 | -| num_gradient_servers | 必选 | 1 | 当前训练任务pserver总数 | +参数说明 + +- port:**必选,默认7164**,pserver监听的起始端口,根据ports_num决定总端口个数,从起始端口监听多个端口用于通信 +- ports_num:**必选,默认1**,监听的端口个数 +- ports_num_for_sparse:**必选,默认1**,用于稀疏类型参数通信的端口个数 +- num_gradient_servers:**必选,默认1**,当前训练任务pserver总数 ### 启动计算节点 执行以下命令启动使用python编写的trainer程序(文件名为任意文件名,如train.py) @@ -105,16 +89,16 @@ paddle.init( pservers="127.0.0.1") ``` -| 参数 | 是否必选 | 默认 | 说明 | -| ------------- | ------------- | ------------- | ------------- | -| use_gpu | 可选 | False | 是否启用GPU训练 | -| trainer_count | 必选 | 1 | 当前训练任务trainer总个数 | -| port | 必选 | 7164 | 连接到pserver的端口 | -| ports_num | 必选 | 1 | 连接到pserver的端口个数 | -| ports_num_for_sparse | 必选 | 1 | 和pserver之间用于稀疏类型参数通信的端口个数 | -| num_gradient_servers | 必选 | 1 | 当前训练任务pserver总数 | -| trainer_id | 必选 | 0 | 每个trainer的唯一ID,从0开始的整数 | -| pservers | 必选 | 127.0.0.1 | 当前训练任务启动的pserver的IP列表,多个IP使用“,”隔开 | +参数说明 + +- use_gpu: **可选,默认False**,是否启用GPU训练 +- trainer_count:**必选,默认1**,当前训练任务trainer总个数 +- port:**必选,默认7164**,连接到pserver的端口 +- ports_num:**必选,默认1**,连接到pserver的端口个数 +- ports_num_for_sparse:**必选,默认1**,和pserver之间用于稀疏类型参数通信的端口个数 +- num_gradient_servers:**必选,默认1**,当前训练任务pserver总数 +- trainer_id:**必选,默认0**,每个trainer的唯一ID,从0开始的整数 +- pservers:**必选,默认127.0.0.1**,当前训练任务启动的pserver的IP列表,多个IP使用“,”隔开 ### 准备数据集 @@ -171,7 +155,7 @@ test.txt-00002 - `my_lib.py`:会被`train.py`调用的一些用户定义的库函数,比如PIL库等。 - `word_dict.pickle`:在`train.py`中会使用到的字典数据文件。 -- `train.py`:训练程序,代码参考[api_train_v2_cluster.py](https://github.com/PaddlePaddle/Paddle/tree/develop/doc/howto/usage/cluster/src/word2vec/prepare.py)。***注意:*** 对于本样例代码,在使用不同的分布式计算平台时,您可能需要修改`train.py`开头的部分(如下),以便获得训练数据的位置和获取环境变量配置: +- `train.py`:训练程序,代码参考[api_train_v2_cluster.py](https://github.com/PaddlePaddle/Paddle/tree/develop/doc/howto/usage/cluster/src/word2vec/api_train_v2_cluster.py)。***注意:*** 对于本样例代码,在使用不同的分布式计算平台时,您可能需要修改`train.py`开头的部分(如下),以便获得训练数据的位置和获取环境变量配置: ```python cluster_train_file = "./train_data_dir/train/train.txt" @@ -195,91 +179,10 @@ PaddlePaddle可以使用多种分布式计算平台构建分布式计算任务 在使用分布式计算平台进行训练时,任务被调度在集群中时,分布式计算平台通常会通过API或者环境变量提供任务运行需要的参数,比如节点的ID、IP和任务节点个数等。 -### 使用Fabric启动集群作业 - -#### 准备一个Linux集群 -可以在`paddle/scripts/cluster_train_v2/fabric/docker_cluster`目录下,执行`kubectl -f ssh_servers.yaml`启动一个测试集群,并使用`kubectl get po -o wide`获得这些节点的IP地址。 - -#### 启动集群作业 - -`paddle.py` 提供了自动化脚本来启动不同节点中的所有 PaddlePaddle 集群进程。默认情况下,所有命令行选项可以设置为 `paddle.py` 命令选项并且 `paddle.py` 将透明、自动地将这些选项应用到 PaddlePaddle 底层进程。 - -`paddle.py` 为方便作业启动提供了两个独特的命令选项。 - -- `job_dispatch_package` 设为本地 `workspace` 目录,它将被分发到 `conf.py` 中设置的所有节点。它有助于帮助频繁修改和访问工作区文件的用户减少负担,否则频繁的多节点工作空间部署可能会很麻烦。 -- `job_workspace` 设为已部署的工作空间目录,`paddle.py` 将跳过分发阶段直接启动所有节点的集群作业。它可以帮助减少分发延迟。 - -`cluster_train/run.sh` 提供了命令样例来运行 `doc/howto/usage/cluster/src/word2vec` 集群任务,只需用您定义的目录修改 `job_dispatch_package` 和 `job_workspace`,然后: -``` -sh run.sh -``` - -集群作业将会在几秒后启动。 - -#### 终止集群作业 -`paddle.py`能获取`Ctrl + C` SIGINT 信号来自动终止它启动的所有进程。只需中断 `paddle.py` 任务来终止集群作业。如果程序崩溃你也可以手动终止。 - -#### 检查集群训练结果 -详细信息请检查 $workspace/log 里的日志,每一个节点都有相同的日志结构。 - -`paddle_trainer.INFO` -提供几乎所有训练的内部输出日志,与本地训练相同。这里检验运行时间模型的收敛。 - -`paddle_pserver2.INFO` -提供 pserver 运行日志,有助于诊断分布式错误。 - -`server.log` -提供 parameter server 进程的 stderr 和 stdout。训练失败时可以检查错误日志。 - -`train.log` -提供训练过程的 stderr 和 stdout。训练失败时可以检查错误日志。 - -#### 检查模型输出 -运行完成后,模型文件将被写入节点 0 的 `output` 目录中。 -工作空间中的 `nodefile` 表示当前集群作业的节点 ID。 - -### 在OpenMPI集群中提交训练作业 - -#### 准备OpenMPI集群 - -执行下面的命令以启动3个节点的OpenMPI集群和一个"head"节点: - -```bash -paddle/scripts/cluster_train_v2/openmpi/docker_cluster -kubectl create -f head.yaml -kubectl create -f mpi-nodes.yaml -``` - -然后可以从head节点ssh无密码登录到OpenMPI的每个节点上。 - -#### 启动集群作业 - -您可以按照下面的步骤在OpenMPI集群中提交paddle训练任务: - -```bash -# 获得head和node节点的IP地址 -kubectl get po -o wide -# 将node节点的IP地址保存到machines文件中 -kubectl get po -o wide | grep nodes | awk '{print $6}' > machines -# 拷贝必要的文件到head节点 -scp -i ssh/id_rsa.mpi.pub machines prepare.py train.py start_mpi_train.sh tutorial@[headIP]:~ -# ssh 登录到head节点 -ssh -i ssh/id_rsa.mpi.pub tutorial@[headIP] -# --------------- 以下操作均在head节点中执行 --------------- -# 准备训练数据 -python prepare.py -# 拷贝训练程序和字典文件到每台MPI节点 -cat machines | xargs -i scp word_dict.pickle train.py start_mpi_train.sh machines {}:/home/tutorial -# 创建日志目录 -mpirun -hostfile machines -n 3 mkdir /home/tutorial/logs -# 拷贝训练数据到各自的节点 -scp train.txt-00000 test.txt-00000 [node1IP]:/home/tutorial -scp train.txt-00001 test.txt-00001 [node2IP]:/home/tutorial -scp train.txt-00002 test.txt-00002 [node3IP]:/home/tutorial -# 启动训练任务 -mpirun -hostfile machines -n 3 /home/tutorial/start_mpi_train.sh -``` - -### 在Kubernetes集群中提交训练作业 +## 在不同集群中运行 -此部分的使用方法可以参考[here](../k8s/k8s_distributed_cn.md)。 + - [fabric](fabric_cn.md) + - [openmpi](openmpi_cn.md) + - [kubernetes](k8s_cn.md) + - [kubernetes distributed](k8s_distributed_cn.md) + - [kubernetes on AWS](k8s_aws_cn.md) diff --git a/doc/howto/usage/cluster/cluster_train_en.md b/doc/howto/usage/cluster/cluster_train_en.md index baa97c0c02ae490fff8587071bd2d4adfb5325e3..f9819470c0c622b4bc0ea064303d742385603230 100644 --- a/doc/howto/usage/cluster/cluster_train_en.md +++ b/doc/howto/usage/cluster/cluster_train_en.md @@ -1,24 +1,5 @@ # PaddlePaddle Distributed Training -* [Introduction](#introduction) -* [Preparations](#preparations) -* [Command-line arguments](#command-line-arguments) - * [Starting parameter server](#starting-parameter-server) - * [Starting trainer](#starting-trainer) - * [Prepare Training Dataset](#prepare-training-dataset) - * [Prepare Training program](#prepare-training-program) -* [Use cluster platforms or cluster management tools](#use-cluster-platforms-or-cluster-management-tools) - * [Cluster Training Using Fabric](#cluster-training-using-fabric) - * [Prepare a Linux cluster](#prepare-a-linux-cluster) - * [Launching Cluster Job](#launching-cluster-job) - * [Kill Cluster Job](#kill-cluster-job) - * [Check Cluster Training Result](#check-cluster-training-result) - * [Check Model Output](#check-model-output) - * [Cluster Training Using OpenMPI](#cluster-training-using-openmpi) - * [Prepare an OpenMPI cluster](#prepare-an-openmpi-cluster) - * [Launching Cluster Job](#launching-cluster-job-1) - * [Cluster Training Using Kubernetes](#cluster-training-using-kubernetes) - ## Introduction In this article, we'll explain how to run distributed training jobs with PaddlePaddle on different types of clusters. The diagram below shows the main architecture of a distributed trainning job: @@ -35,7 +16,7 @@ When training with synchronize SGD, PaddlePaddle uses an internal "synchronize b ## Preparations 1. Prepare your computer cluster. It's normally a bunch of Linux servers connected by LAN. Each server will be assigned a unique IP address. The computers in the cluster can be called "nodes". -2. Install PaddlePaddle on every node. If you are going to take advantage of GPU cards, you'll also need to install proper driver and CUDA libraries. To install PaddlePaddle please read [this build and install](https://github.com/PaddlePaddle/Paddle/tree/develop/doc/getstarted/build_and_install) document. We strongly recommend using [Docker installation](https://github.com/PaddlePaddle/Paddle/blob/develop/doc/getstarted/build_and_install/docker_install_en.rst). +2. Install PaddlePaddle on every node. If you are going to take advantage of GPU cards, you'll also need to install proper driver and CUDA libraries. To install PaddlePaddle please read [this build and install](http://www.paddlepaddle.org/docs/develop/documentation/en/getstarted/build_and_install/index_en.html) document. We strongly recommend using [Docker installation](http://www.paddlepaddle.org/docs/develop/documentation/en/getstarted/build_and_install/docker_install_en.html). After installation, you can check the version by typing the below command (run a docker container if using docker: `docker run -it paddlepaddle/paddle:[tag] /bin/bash`): @@ -67,12 +48,12 @@ If you wish to run parameter servers in background, and save a log file, you can $ stdbuf -oL /usr/bin/nohup paddle pserver --port=7164 --ports_num=1 --ports_num_for_sparse=1 --num_gradient_servers=1 &> pserver.log ``` -| param | required | default | description | -| ------------- | ------------- | ------------- | ------------- | -| port | required | 7164 | port which parameter server will listen on. If ports_num greater than 1, parameter server will listen on multiple ports for more network throughput | -| ports_num | required | 1 | total number of ports will listen on | -| ports_num_for_sparse | required | 1 | number of ports which serves sparse parameter update | -| num_gradient_servers | required | 1 | total number of gradient servers | +Parameter Description + +- port: **required, default 7164**, port which parameter server will listen on. If ports_num greater than 1, parameter server will listen on multiple ports for more network throughput. +- ports_num: **required, default 1**, total number of ports will listen on. +- ports_num_for_sparse: **required, default 1**, number of ports which serves sparse parameter update. +- num_gradient_servers: **required, default 1**, total number of gradient servers. ### Starting trainer Type the command below to start the trainer(name the file whatever you want, like "train.py") @@ -111,16 +92,16 @@ paddle.init( pservers="127.0.0.1") ``` -| param | required | default | description | -| ------------- | ------------- | ------------- | ------------- | -| use_gpu | optional | False | set to "True" to enable GPU training | -| trainer_count | required | 1 | total count of trainers in the training job | -| port | required | 7164 | port to connect to parameter server | -| ports_num | required | 1 | number of ports for communication | -| ports_num_for_sparse | required | 1 | number of ports for sparse type caculation | -| num_gradient_servers | required | 1 | total number of gradient server | -| trainer_id | required | 0 | ID for every trainer, start from 0 | -| pservers | required | 127.0.0.1 | list of IPs of parameter servers, separated by "," | +Parameter Description + +- use_gpu: **optional, default False**, set to "True" to enable GPU training. +- trainer_count: **required, default 1**, total count of trainers in the training job. +- port: **required, default 7164**, port to connect to parameter server. +- ports_num: **required, default 1**, number of ports for communication. +- ports_num_for_sparse: **required, default 1**, number of ports for sparse type caculation. +- num_gradient_servers: **required, default 1**, total number of gradient server. +- trainer_id: **required, default 0**, ID for every trainer, start from 0. +- pservers: **required, default 127.0.0.1**, list of IPs of parameter servers, separated by ",". ### Prepare Training Dataset @@ -178,7 +159,7 @@ Your workspace may looks like: - `my_lib.py`: user defined libraries, like PIL libs. This is optional. - `word_dict.pickle`: dict file for training word embeding. -- `train.py`: training program. Sample code: [api_train_v2_cluster.py](https://github.com/PaddlePaddle/Paddle/tree/develop/doc/howto/usage/cluster/src/word2vec/prepare.py). ***NOTE:*** You may need to modify the head part of `train.py` when using different cluster platform to retrive configuration environment variables: +- `train.py`: training program. Sample code: [api_train_v2_cluster.py](https://github.com/PaddlePaddle/Paddle/tree/develop/doc/howto/usage/cluster/src/word2vec/api_train_v2_cluster.py). ***NOTE:*** You may need to modify the head part of `train.py` when using different cluster platform to retrive configuration environment variables: ```python cluster_train_file = "./train_data_dir/train/train.txt" @@ -202,92 +183,10 @@ We'll introduce cluster job management on these platforms. The examples can be f These cluster platforms provide API or environment variables for training processes, when the job is dispatched to different nodes. Like node ID, IP or total number of nodes etc. -### Cluster Training Using Fabric - -#### Prepare a Linux cluster - -Run `kubectl -f ssh_servers.yaml` under the directory: `paddle/scripts/cluster_train_v2/fabric/docker_cluster` will launch a demo cluster. Run `kubectl get po -o wide` to get IP addresses of these nodes. - -#### Launching Cluster Job -`paddle.py` provides automatical scripts to start all PaddlePaddle cluster processes in different nodes. By default, all command line options can be set as `paddle.py` command options and `paddle.py` will transparently and automatically set these options to PaddlePaddle lower level processes. - -`paddle.py`provides two distinguished command option for easy job launching. - -- `job_dispatch_package` set it with local `workspace` directory, it will be dispatched to all nodes which is set in `conf.py`. It could be helpful for frequently manipulating workspace files. otherwise, frequent multi-nodes workspace deployment is very annoying. -- `job_workspace` set it with already deployed workspace directory, `paddle.py` will skip dispatch stage to directly launch cluster job with all nodes. It could help to reduce heavy -dispatch latency. - -`cluster_train/run.sh` provides command line sample to run `demo/recommendation` cluster job, just modify `job_dispatch_package` and `job_workspace` with your defined directory, then: -``` -sh run.sh -``` - -The cluster Job will start in several seconds. - -#### Kill Cluster Job -`paddle.py` can capture `Ctrl + C` SIGINT signal to automatically kill all processes launched by it. So just stop `paddle.py` to kill cluster job. You should manually kill the job if the program crashed. - -#### Check Cluster Training Result -Check log in $workspace/log for details, each node owns same log structure. - -`paddle_trainer.INFO` -It provides almost all internal output log for training, same as local training. Check runtime model convergence here. - -`paddle_pserver2.INFO` -It provides parameter server running log, which could help to diagnose distributed error. - -`server.log` -It provides stderr and stdout of parameter server process. Check error log if training crashes. - -`train.log` -It provides stderr and stdout of trainer process. Check error log if training crashes. - -#### Check Model Output -After one pass finished, model files will be written in `output` directory in node 0. -`nodefile` in workspace indicates the node id of current cluster job. - -### Cluster Training Using OpenMPI - -#### Prepare an OpenMPI cluster - -Run the following command to start a 3-node MPI cluster and one "head" node. - -```bash -cd paddle/scripts/cluster_train_v2/openmpi/docker_cluster -kubectl create -f head.yaml -kubectl create -f mpi-nodes.yaml -``` - -Then you can log in to every OpenMPI node using ssh without input any passwords. - -#### Launching Cluster Job - -Follow the steps to launch a PaddlePaddle training job in OpenMPI cluster:\ - -```bash -# find out node IP addresses -kubectl get po -o wide -# generate a "machines" file containing node IP addresses -kubectl get po -o wide | grep nodes | awk '{print $6}' > machines -# copy necessary files onto "head" node -scp -i ssh/id_rsa.mpi.pub machines prepare.py train.py start_mpi_train.sh tutorial@[headIP]:~ -# login to head node using ssh -ssh -i ssh/id_rsa.mpi.pub tutorial@[headIP] -# --------------- in head node --------------- -# prepare training data -python prepare.py -# copy training data and dict file to MPI nodes -cat machines | xargs -i scp word_dict.pickle train.py start_mpi_train.sh machines {}:/home/tutorial -# creat a directory for storing log files -mpirun -hostfile machines -n 3 mkdir /home/tutorial/logs -# copy training data to every node -scp train.txt-00000 test.txt-00000 [node1IP]:/home/tutorial -scp train.txt-00001 test.txt-00001 [node2IP]:/home/tutorial -scp train.txt-00002 test.txt-00002 [node3IP]:/home/tutorial -# start the job -mpirun -hostfile machines -n 3 /home/tutorial/start_mpi_train.sh -``` - -### Cluster Training Using Kubernetes +## Use different clusters -The details can be found [here](../k8s/k8s_cn.md) + - [fabric](fabric_en.md) + - [openmpi](openmpi_en.md) + - [kubernetes](k8s_en.md) + - kubernetes distributed + - [kubernetes on AWS](k8s_aws_en.md) diff --git a/doc/howto/usage/cluster/fabric_cn.md b/doc/howto/usage/cluster/fabric_cn.md new file mode 100644 index 0000000000000000000000000000000000000000..0385e401b399a51fad112e604dc56cb2f84c0a4b --- /dev/null +++ b/doc/howto/usage/cluster/fabric_cn.md @@ -0,0 +1,42 @@ +# 使用fabric启动集群训练 + +## 准备一个Linux集群 +可以在`paddle/scripts/cluster_train_v2/fabric/docker_cluster`目录下,执行`kubectl -f ssh_servers.yaml`启动一个测试集群,并使用`kubectl get po -o wide`获得这些节点的IP地址。 + +## 启动集群作业 + +`paddle.py` 提供了自动化脚本来启动不同节点中的所有 PaddlePaddle 集群进程。默认情况下,所有命令行选项可以设置为 `paddle.py` 命令选项并且 `paddle.py` 将透明、自动地将这些选项应用到 PaddlePaddle 底层进程。 + +`paddle.py` 为方便作业启动提供了两个独特的命令选项。 + +- `job_dispatch_package` 设为本地 `workspace` 目录,它将被分发到 `conf.py` 中设置的所有节点。它有助于帮助频繁修改和访问工作区文件的用户减少负担,否则频繁的多节点工作空间部署可能会很麻烦。 +- `job_workspace` 设为已部署的工作空间目录,`paddle.py` 将跳过分发阶段直接启动所有节点的集群作业。它可以帮助减少分发延迟。 + +`cluster_train/run.sh` 提供了命令样例来运行 `doc/howto/usage/cluster/src/word2vec` 集群任务,只需用您定义的目录修改 `job_dispatch_package` 和 `job_workspace`,然后: +``` +sh run.sh +``` + +集群作业将会在几秒后启动。 + +## 终止集群作业 +`paddle.py`能获取`Ctrl + C` SIGINT 信号来自动终止它启动的所有进程。只需中断 `paddle.py` 任务来终止集群作业。如果程序崩溃你也可以手动终止。 + +## 检查集群训练结果 +详细信息请检查 $workspace/log 里的日志,每一个节点都有相同的日志结构。 + +`paddle_trainer.INFO` +提供几乎所有训练的内部输出日志,与本地训练相同。这里检验运行时间模型的收敛。 + +`paddle_pserver2.INFO` +提供 pserver 运行日志,有助于诊断分布式错误。 + +`server.log` +提供 parameter server 进程的 stderr 和 stdout。训练失败时可以检查错误日志。 + +`train.log` +提供训练过程的 stderr 和 stdout。训练失败时可以检查错误日志。 + +## 检查模型输出 +运行完成后,模型文件将被写入节点 0 的 `output` 目录中。 +工作空间中的 `nodefile` 表示当前集群作业的节点 ID。 diff --git a/doc/howto/usage/cluster/fabric_en.md b/doc/howto/usage/cluster/fabric_en.md new file mode 100644 index 0000000000000000000000000000000000000000..bf270d89ab8514801ca4629cf412f73257429df9 --- /dev/null +++ b/doc/howto/usage/cluster/fabric_en.md @@ -0,0 +1,43 @@ +# Cluster Training Using Fabric + +## Prepare a Linux cluster + +Run `kubectl -f ssh_servers.yaml` under the directory: `paddle/scripts/cluster_train_v2/fabric/docker_cluster` will launch a demo cluster. Run `kubectl get po -o wide` to get IP addresses of these nodes. + +## Launching Cluster Job +`paddle.py` provides automatical scripts to start all PaddlePaddle cluster processes in different nodes. By default, all command line options can be set as `paddle.py` command options and `paddle.py` will transparently and automatically set these options to PaddlePaddle lower level processes. + +`paddle.py`provides two distinguished command option for easy job launching. + +- `job_dispatch_package` set it with local `workspace` directory, it will be dispatched to all nodes which is set in `conf.py`. It could be helpful for frequently manipulating workspace files. otherwise, frequent multi-nodes workspace deployment is very annoying. +- `job_workspace` set it with already deployed workspace directory, `paddle.py` will skip dispatch stage to directly launch cluster job with all nodes. It could help to reduce heavy +dispatch latency. + +`cluster_train/run.sh` provides command line sample to run `demo/recommendation` cluster job, just modify `job_dispatch_package` and `job_workspace` with your defined directory, then: +``` +sh run.sh +``` + +The cluster Job will start in several seconds. + +## Kill Cluster Job +`paddle.py` can capture `Ctrl + C` SIGINT signal to automatically kill all processes launched by it. So just stop `paddle.py` to kill cluster job. You should manually kill the job if the program crashed. + +## Check Cluster Training Result +Check log in $workspace/log for details, each node owns same log structure. + +`paddle_trainer.INFO` +It provides almost all internal output log for training, same as local training. Check runtime model convergence here. + +`paddle_pserver2.INFO` +It provides parameter server running log, which could help to diagnose distributed error. + +`server.log` +It provides stderr and stdout of parameter server process. Check error log if training crashes. + +`train.log` +It provides stderr and stdout of trainer process. Check error log if training crashes. + +## Check Model Output +After one pass finished, model files will be written in `output` directory in node 0. +`nodefile` in workspace indicates the node id of current cluster job. diff --git a/doc/howto/usage/cluster/k8s_aws_cn.md b/doc/howto/usage/cluster/k8s_aws_cn.md new file mode 120000 index 0000000000000000000000000000000000000000..c44cd9a731bed7067cdf19aa2f714abdce6c736a --- /dev/null +++ b/doc/howto/usage/cluster/k8s_aws_cn.md @@ -0,0 +1 @@ +k8s_aws_en.md \ No newline at end of file diff --git a/doc/howto/usage/k8s/k8s_aws_en.md b/doc/howto/usage/cluster/k8s_aws_en.md similarity index 100% rename from doc/howto/usage/k8s/k8s_aws_en.md rename to doc/howto/usage/cluster/k8s_aws_en.md diff --git a/doc/howto/usage/k8s/k8s_cn.md b/doc/howto/usage/cluster/k8s_cn.md similarity index 100% rename from doc/howto/usage/k8s/k8s_cn.md rename to doc/howto/usage/cluster/k8s_cn.md diff --git a/doc/howto/usage/k8s/k8s_distributed_cn.md b/doc/howto/usage/cluster/k8s_distributed_cn.md similarity index 91% rename from doc/howto/usage/k8s/k8s_distributed_cn.md rename to doc/howto/usage/cluster/k8s_distributed_cn.md index a9bebf09558b06993119803458977abedbbfbdd0..0fc9e37a990104e942636fc807f67a99f0df9da8 100644 --- a/doc/howto/usage/k8s/k8s_distributed_cn.md +++ b/doc/howto/usage/cluster/k8s_distributed_cn.md @@ -1,6 +1,6 @@ # Kubernetes分布式训练 -前一篇文章介绍了如何在Kubernetes集群上启动一个单机PaddlePaddle训练作业 (Job)。在这篇文章里,我们介绍如何在Kubernetes集群上进行分布式PaddlePaddle训练作业。关于PaddlePaddle的分布式训练,文章 [Cluster Training](https://github.com/baidu/Paddle/blob/develop/doc/cluster/opensource/cluster_train.md)介绍了一种通过SSH远程分发任务,进行分布式训练的方法,与此不同的是,本文将介绍在Kubernetes容器管理平台上快速构建PaddlePaddle容器集群,进行分布式训练的方案。 +前一篇文章介绍了如何在Kubernetes集群上启动一个单机PaddlePaddle训练作业 (Job)。在这篇文章里,我们介绍如何在Kubernetes集群上进行分布式PaddlePaddle训练作业。关于PaddlePaddle的分布式训练,文章 [Cluster Training](http://www.paddlepaddle.org/docs/develop/documentation/zh/howto/usage/cluster/cluster_train_cn.html)介绍了一种通过SSH远程分发任务,进行分布式训练的方法,与此不同的是,本文将介绍在Kubernetes容器管理平台上快速构建PaddlePaddle容器集群,进行分布式训练的方案。 有关Kubernetes相关概念以及如何搭建和配置Kubernetes集群,可以参考[k8s_basis](./k8s_basis_cn.md)。 @@ -28,7 +28,7 @@ PaddlePaddle镜像需要提供`paddle pserver`与`paddle train`进程的运行 - 拷贝训练文件到容器内 - 生成`paddle pserver`与`paddle train`进程的启动参数,并且启动训练 -因为官方镜像 `paddledev/paddle:cpu-latest` 内已经包含PaddlePaddle的执行程序但是还没上述功能,所以我们可以在这个基础上,添加启动脚本,制作新镜像来完成以上的工作。参考镜像的[*Dockerfile*](https://github.com/PaddlePaddle/Paddle/blob/develop/doc/howto/usage/cluster/k8s/src/k8s_train/Dockerfile)。 +因为官方镜像 `paddledev/paddle:cpu-latest` 内已经包含PaddlePaddle的执行程序但是还没上述功能,所以我们可以在这个基础上,添加启动脚本,制作新镜像来完成以上的工作。参考镜像的[*Dockerfile*](https://github.com/PaddlePaddle/Paddle/blob/develop/doc/howto/usage/cluster/src/k8s_train/Dockerfile)。 ```bash $ cd doc/howto/usage/k8s/src/k8s_train @@ -149,20 +149,19 @@ spec: 文件中,`metadata`下的`name`表示这个job的名字。`parallelism,completions`字段表示这个job会同时开启3个PaddlePaddle节点,成功训练且退出的pod数目为3时,这个job才算成功结束。然后申明一个存储卷`jobpath`,代表宿主机目录`/home/work/mfs`,在对容器的描述`containers`字段中,将此目录挂载为容器的`/home/jobpath`目录,这样容器的`/home/jobpath`目录就成为了共享存储,放在这个目录里的文件其实是保存到了MFS上。 -`env`字段表示容器的环境变量,我们将`paddle`运行的一些参数通过这种方式传递到容器内。 +`env`字段表示容器的环境变量,我们将`paddle`运行的一些参数通过这种方式传递到容器内: -环境变量 | 说明 ---- | --- -JOB_PATH | 共享存储挂在的路径 -JOB_NAME | Job的名字 -TRAIN_CONFIG_DIR | 本次训练文件所在目录,与JOB_PATH,JOB_NAME组合可以找到本次训练需要的文件路径 -CONF_PADDLE_NIC | `paddle pserver`进程需要的`--nics`参数,即网卡名 -CONF_PADDLE_PORT | `paddle paserver`的`--port`参数 -CONF_PADDLE_PORTS_NUM | 稠密更新的端口数量,即`--ports_num`参数 -CONF_PADDLE_PORTS_NUM_SPARSE | 稀疏更新的端口数量,即`--ports_num_for_sparse`参数 -CONF_PADDLE_GRADIENT_NUM | 训练节点数量,即`--num_gradient_servers参数` -这些参数的具体描述,读者可以查看[这里](http://www.paddlepaddle.org/doc/ui/cmd_argument/detail_introduction.html#parameter-server-and-distributed-communication)。 +- JOB_PATH:共享存储挂在的路径 +- JOB_NAME:Job的名字 +- TRAIN_CONFIG_DIR:本次训练文件所在目录,与JOB_PATH,JOB_NAME组合可以找到本次训练需要的文件路径 +- CONF_PADDLE_NIC:`paddle pserver`进程需要的`--nics`参数,即网卡名 +- CONF_PADDLE_PORT:`paddle paserver`的`--port`参数 +- CONF_PADDLE_PORTS_NUM:稠密更新的端口数量,即`--ports_num`参数 +- CONF_PADDLE_PORTS_NUM_SPARSE:稀疏更新的端口数量,即`--ports_num_for_sparse`参数 +- CONF_PADDLE_GRADIENT_NUM:训练节点数量,即`--num_gradient_servers参数` + +这些参数的具体描述,读者可以查看[这里](http://www.paddlepaddle.org/docs/develop/documentation/zh/howto/usage/cmd_parameter/detail_introduction_cn.html)。 编写完YAML文件后,可以使用Kubernetes的命令行工具创建job。 diff --git a/doc/howto/usage/k8s/k8s_en.md b/doc/howto/usage/cluster/k8s_en.md similarity index 100% rename from doc/howto/usage/k8s/k8s_en.md rename to doc/howto/usage/cluster/k8s_en.md diff --git a/doc/howto/usage/cluster/openmpi_cn.md b/doc/howto/usage/cluster/openmpi_cn.md new file mode 100644 index 0000000000000000000000000000000000000000..831cafdc03c6a908f31769d0467de022df42dab5 --- /dev/null +++ b/doc/howto/usage/cluster/openmpi_cn.md @@ -0,0 +1,41 @@ +# 在OpenMPI集群中提交训练作业 + +## 准备OpenMPI集群 + +执行下面的命令以启动3个节点的OpenMPI集群和一个"head"节点: + +```bash +paddle/scripts/cluster_train_v2/openmpi/docker_cluster +kubectl create -f head.yaml +kubectl create -f mpi-nodes.yaml +``` + +然后可以从head节点ssh无密码登录到OpenMPI的每个节点上。 + +## 启动集群作业 + +您可以按照下面的步骤在OpenMPI集群中提交paddle训练任务: + +```bash +# 获得head和node节点的IP地址 +kubectl get po -o wide +# 将node节点的IP地址保存到machines文件中 +kubectl get po -o wide | grep nodes | awk '{print $6}' > machines +# 拷贝必要的文件到head节点 +scp -i ssh/id_rsa.mpi.pub machines prepare.py train.py start_mpi_train.sh tutorial@[headIP]:~ +# ssh 登录到head节点 +ssh -i ssh/id_rsa.mpi.pub tutorial@[headIP] +# --------------- 以下操作均在head节点中执行 --------------- +# 准备训练数据 +python prepare.py +# 拷贝训练程序和字典文件到每台MPI节点 +cat machines | xargs -i scp word_dict.pickle train.py start_mpi_train.sh machines {}:/home/tutorial +# 创建日志目录 +mpirun -hostfile machines -n 3 mkdir /home/tutorial/logs +# 拷贝训练数据到各自的节点 +scp train.txt-00000 test.txt-00000 [node1IP]:/home/tutorial +scp train.txt-00001 test.txt-00001 [node2IP]:/home/tutorial +scp train.txt-00002 test.txt-00002 [node3IP]:/home/tutorial +# 启动训练任务 +mpirun -hostfile machines -n 3 /home/tutorial/start_mpi_train.sh +``` diff --git a/doc/howto/usage/cluster/openmpi_en.md b/doc/howto/usage/cluster/openmpi_en.md new file mode 100644 index 0000000000000000000000000000000000000000..09af46e25ebe1f843dc7c7be0997dc706413b65c --- /dev/null +++ b/doc/howto/usage/cluster/openmpi_en.md @@ -0,0 +1,41 @@ +# Cluster Training Using OpenMPI + +## Prepare an OpenMPI cluster + +Run the following command to start a 3-node MPI cluster and one "head" node. + +```bash +cd paddle/scripts/cluster_train_v2/openmpi/docker_cluster +kubectl create -f head.yaml +kubectl create -f mpi-nodes.yaml +``` + +Then you can log in to every OpenMPI node using ssh without input any passwords. + +## Launching Cluster Job + +Follow the steps to launch a PaddlePaddle training job in OpenMPI cluster:\ + +```bash +# find out node IP addresses +kubectl get po -o wide +# generate a "machines" file containing node IP addresses +kubectl get po -o wide | grep nodes | awk '{print $6}' > machines +# copy necessary files onto "head" node +scp -i ssh/id_rsa.mpi.pub machines prepare.py train.py start_mpi_train.sh tutorial@[headIP]:~ +# login to head node using ssh +ssh -i ssh/id_rsa.mpi.pub tutorial@[headIP] +# --------------- in head node --------------- +# prepare training data +python prepare.py +# copy training data and dict file to MPI nodes +cat machines | xargs -i scp word_dict.pickle train.py start_mpi_train.sh machines {}:/home/tutorial +# creat a directory for storing log files +mpirun -hostfile machines -n 3 mkdir /home/tutorial/logs +# copy training data to every node +scp train.txt-00000 test.txt-00000 [node1IP]:/home/tutorial +scp train.txt-00001 test.txt-00001 [node2IP]:/home/tutorial +scp train.txt-00002 test.txt-00002 [node3IP]:/home/tutorial +# start the job +mpirun -hostfile machines -n 3 /home/tutorial/start_mpi_train.sh +``` diff --git 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-[*Kubernetes*](http://kubernetes.io/)是Google开源的容器集群管理系统,其提供应用部署、维护、扩展机制等功能,利用Kubernetes能方便地管理跨机器运行容器化的应用。Kubernetes可以在物理机或虚拟机上运行,且支持部署到[AWS](http://kubernetes.io/docs/getting-started-guides/aws),[Azure](http://kubernetes.io/docs/getting-started-guides/azure/),[GCE](http://kubernetes.io/docs/getting-started-guides/gce)等多种公有云环境。介绍分布式训练之前,需要对[Kubernetes](http://kubernetes.io/)有一个基本的认识,下面先简要介绍一下本文用到的几个Kubernetes概念。 - -- [*Node*](http://kubernetes.io/docs/admin/node/) 表示一个Kubernetes集群中的一个工作节点,这个节点可以是物理机或者虚拟机,Kubernetes集群就是由node节点与master节点组成的。 - -- [*Pod*](http://kubernetes.io/docs/user-guide/pods/) 是一组(一个或多个)容器,pod是Kubernetes的最小调度单元,一个pod中的所有容器会被调度到同一个node上。Pod中的容器共享NET,PID,IPC,UTS等Linux namespace。由于容器之间共享NET namespace,所以它们使用同一个IP地址,可以通过*localhost*互相通信。不同pod之间可以通过IP地址访问。 - -- [*Job*](http://kubernetes.io/docs/user-guide/jobs/) 描述Kubernetes上运行的作业,一次作业称为一个job,通常每个job包括一个或者多个pods,job启动后会创建这些pod并开始执行一个程序,等待这个程序执行成功并返回0则成功退出,如果执行失败,也可以配置不同的重试机制。 - -- [*Volume*](http://kubernetes.io/docs/user-guide/volumes/) 存储卷,是pod内的容器都可以访问的共享目录,也是容器与node之间共享文件的方式,因为容器内的文件都是暂时存在的,当容器因为各种原因被销毁时,其内部的文件也会随之消失。通过volume,就可以将这些文件持久化存储。Kubernetes支持多种volume,例如hostPath(宿主机目录),gcePersistentDisk,awsElasticBlockStore等。 - -- [*Namespaces*](https://kubernetes.io/docs/user-guide/namespaces/) 命名空间,在kubernetes中创建的所有资源对象(例如上文的pod,job)等都属于一个命名空间,在同一个命名空间中,资源对象的名字是唯一的,不同空间的资源名可以重复,命名空间主要为了对象进行逻辑上的分组便于管理。本文只使用了默认命名空间。 - -- [*PersistentVolume*](https://kubernetes.io/docs/user-guide/persistent-volumes/): 和[*PersistentVolumeClaim*](https://kubernetes.io/docs/user-guide/persistent-volumes/#persistentvolumeclaims)结合,将外部的存储服务在Kubernetes中描述成为统一的资源形式,便于存储资源管理和Pod引用。 - -## 部署Kubernetes集群 - -Kubernetes提供了多种集群部署的方案,本文档内不重复介绍。这里给出集中常见的部署方法: - -- [*minikube*](https://kubernetes.io/docs/getting-started-guides/minikube/): 快速在本地启动一个单机的kubernetes服务器,便于本地验证和测试。 -- [*kubeadm*](http://kubernetes.io/docs/getting-started-guides/kubeadm/): 在不同操作系统,不同主机(Bare-Metal, AWS, GCE)条件下,快速部署集群。 -- [*AWS EC2*](https://kubernetes.io/docs/getting-started-guides/aws/): 在aws上快速部署集群。 -- [*Bare-Metal*](https://kubernetes.io/docs/getting-started-guides/centos/centos_manual_config/): 在物理机上手动部署。 - -可以参考[这个表格](https://kubernetes.io/docs/getting-started-guides/#table-of-solutions)选择适合您的场景的合适方案。 - -## 选择存储方案 - -容器不会保留在运行时生成的数据,job或者应用程序在容器中运行时生成的数据会在容器销毁时消失。为了完成分布式机器学习训练任务,需要有一个外部的存储服务来保存训练所需数据和训练输出。 -常见的可选存储服务包括: - -- [*NFS*](https://github.com/kubernetes/kubernetes/tree/master/examples/volumes/nfs): 可以将磁盘上某个目录共享给网络中其他机器访问。部署和配置比较简单,可以用于小量数据的验证。不提供分布式存储,高可用,冗余等功能。NFS的部署方法可以参考[这里](http://www.tecmint.com/how-to-setup-nfs-server-in-linux/)。 -- [*GlusterFS*](http://gluster.readthedocs.io/en/latest/Quick-Start-Guide/Quickstart/): 网络分布式文件系统,可以在Kubernetes中按照[这个](https://github.com/kubernetes/kubernetes/tree/master/examples/volumes/glusterfs)例子使用。 -- [*Ceph*](http://docs.ceph.com/docs/master/): 分布式文件系统,支持rbd,POSIX API接口(ceph fs)和对象存储API,参考[这里](https://kubernetes.io/docs/user-guide/volumes/#rbd)。 -- [*MooseFS*](https://moosefs.com/documentation.html): 一个分布式的存储系统。需要先挂载到服务器Node上再通过kubernetes hostPath Volume挂载到容器中。 - -## 配置kubectl - -### 安装kubectl -``` -# OS X -curl -LO https://storage.googleapis.com/kubernetes-release/release/$(curl -s https://storage.googleapis.com/kubernetes-release/release/stable.txt)/bin/darwin/amd64/kubectl - -# Linux -curl -LO https://storage.googleapis.com/kubernetes-release/release/$(curl -s https://storage.googleapis.com/kubernetes-release/release/stable.txt)/bin/linux/amd64/kubectl - -# Windows -curl -LO https://storage.googleapis.com/kubernetes-release/release/$(curl -s https://storage.googleapis.com/kubernetes-release/release/stable.txt)/bin/windows/amd64/kubectl.exe -``` - -### 配置kubectl访问你的kubernetes集群 - -编辑`~/.kube/config`这个配置文件,修改`Master-IP`的地址。如果使用SSL认证,则需要配置`certificate-authority`和`users`中的用户证书。如果是使用非SSL方式访问(比如通过8080端口),也可以去掉这些证书的配置。 -``` -apiVersion: v1 -clusters: -- cluster: - certificate-authority: /path/to/ca.crt - server: https://[Master-IP]:443 - name: minikube -contexts: -- context: - cluster: minikube - user: minikube - name: minikube -current-context: minikube -kind: Config -preferences: {} -users: -- name: minikube - user: - client-certificate: /path/to/apiserver.crt - client-key: /Users/wuyi/.minikube/apiserver.key -``` diff --git a/doc/howto/usage/k8s/src/k8s-paddle-arch.png b/doc/howto/usage/k8s/src/k8s-paddle-arch.png deleted file mode 100644 index 2183a232ad402b76f82a67234a5c93e13ce97ac3..0000000000000000000000000000000000000000 Binary files a/doc/howto/usage/k8s/src/k8s-paddle-arch.png and /dev/null differ diff --git a/paddle/operators/seq_expand_op.cc b/paddle/operators/sequence_expand_op.cc similarity index 82% rename from paddle/operators/seq_expand_op.cc rename to paddle/operators/sequence_expand_op.cc index ede9754697429a4d24c51cf494b0ea8f4e408b44..770161b593e232f2f2cf4a2ccb952391557b9a3d 100644 --- a/paddle/operators/seq_expand_op.cc +++ b/paddle/operators/sequence_expand_op.cc @@ -12,14 +12,14 @@ See the License for the specific language governing permissions and limitations under the License. */ -#include "paddle/operators/seq_expand_op.h" +#include "paddle/operators/sequence_expand_op.h" namespace paddle { namespace operators { using framework::Tensor; -class SeqExpandOp : public framework::OperatorWithKernel { +class SequenceExpandOp : public framework::OperatorWithKernel { public: using framework::OperatorWithKernel::OperatorWithKernel; @@ -35,25 +35,25 @@ class SeqExpandOp : public framework::OperatorWithKernel { } }; -class SeqExpandOpMaker : public framework::OpProtoAndCheckerMaker { +class SequenceExpandOpMaker : public framework::OpProtoAndCheckerMaker { public: - SeqExpandOpMaker(framework::OpProto* proto, - framework::OpAttrChecker* op_checker) + SequenceExpandOpMaker(framework::OpProto* proto, + framework::OpAttrChecker* op_checker) : OpProtoAndCheckerMaker(proto, op_checker) { AddInput("X", "(Tensor or LoDTensor) The input(X) of this operator can be a " "LoDTensor or a base Tensor."); AddInput("Y", - "(LoDTensor)The reference input(Y) of seq_expand op." + "(LoDTensor)The reference input(Y) of sequence_expand op." "It must be a LoDTensor with k-level(k>0)." "The input(X) will be expanded according to LOD of input(Y)." "The element numbers of last level in input(Y) " "must be equal to dims[0] of input(X)."); AddOutput("Out", - "(LodTensor)The output of seq_expand op." + "(LodTensor)The output of sequence_expand op." "The lod of output will be as same as input(Y)'s lod."); AddComment(R"DOC( -Seq Expand Operator. +Sequence Expand Operator. This operator expands input(X) according to LOD of input(Y). Following are cases to better explain how this works: @@ -124,7 +124,7 @@ then we get 2-level LoDTensor } }; -class SeqExpandOpGrad : public framework::OperatorWithKernel { +class SequenceExpandOpGrad : public framework::OperatorWithKernel { public: using framework::OperatorWithKernel::OperatorWithKernel; @@ -146,11 +146,11 @@ class SeqExpandOpGrad : public framework::OperatorWithKernel { } // namespace paddle namespace ops = paddle::operators; -REGISTER_OP(seq_expand, ops::SeqExpandOp, ops::SeqExpandOpMaker, - seq_expand_grad, ops::SeqExpandOpGrad); +REGISTER_OP(sequence_expand, ops::SequenceExpandOp, ops::SequenceExpandOpMaker, + sequence_expand_grad, ops::SequenceExpandOpGrad); REGISTER_OP_CPU_KERNEL( - seq_expand, - ops::SeqExpandKernel); + sequence_expand, + ops::SequenceExpandKernel); REGISTER_OP_CPU_KERNEL( - seq_expand_grad, - ops::SeqExpandGradKernel); + sequence_expand_grad, + ops::SequenceExpandGradKernel); diff --git a/paddle/operators/seq_expand_op.cu b/paddle/operators/sequence_expand_op.cu similarity index 74% rename from paddle/operators/seq_expand_op.cu rename to paddle/operators/sequence_expand_op.cu index 8e67ce9ccb29497a957508a9ecdc6b810a7de543..f79c84dff8bf4f0e97f89d5c8bb23655abd73d46 100644 --- a/paddle/operators/seq_expand_op.cu +++ b/paddle/operators/sequence_expand_op.cu @@ -13,12 +13,12 @@ limitations under the License. */ #define EIGEN_USE_GPU -#include "paddle/operators/seq_expand_op.h" +#include "paddle/operators/sequence_expand_op.h" namespace ops = paddle::operators; REGISTER_OP_CUDA_KERNEL( - seq_expand, - ops::SeqExpandKernel); + sequence_expand, + ops::SequenceExpandKernel); REGISTER_OP_CUDA_KERNEL( - seq_expand_grad, - ops::SeqExpandGradKernel); + sequence_expand_grad, + ops::SequenceExpandGradKernel); diff --git a/paddle/operators/seq_expand_op.h b/paddle/operators/sequence_expand_op.h similarity index 96% rename from paddle/operators/seq_expand_op.h rename to paddle/operators/sequence_expand_op.h index fbee0db454f9701e3f58a41008efd24e728d0600..411b819c6563ec95b87881082caef5f5eb471d3b 100644 --- a/paddle/operators/seq_expand_op.h +++ b/paddle/operators/sequence_expand_op.h @@ -24,7 +24,7 @@ namespace operators { using LoDTensor = framework::LoDTensor; template -class SeqExpandKernel : public framework::OpKernel { +class SequenceExpandKernel : public framework::OpKernel { public: void Compute(const framework::ExecutionContext& context) const override { auto* x = context.Input("X"); @@ -71,7 +71,7 @@ class SeqExpandKernel : public framework::OpKernel { * * */ template -class SeqExpandGradKernel : public framework::OpKernel { +class SequenceExpandGradKernel : public framework::OpKernel { public: void Compute(const framework::ExecutionContext& context) const override { auto* d_out = context.Input(framework::GradVarName("Out")); diff --git a/python/paddle/v2/fluid/layers/nn.py b/python/paddle/v2/fluid/layers/nn.py index ab443826bd7b4479061b721166c86bfbfc77bc38..9728adba735d9902bde349161f4d934888650615 100644 --- a/python/paddle/v2/fluid/layers/nn.py +++ b/python/paddle/v2/fluid/layers/nn.py @@ -12,7 +12,8 @@ __all__ = [ 'fc', 'embedding', 'dynamic_lstm', 'gru_unit', 'linear_chain_crf', 'crf_decoding', 'cos_sim', 'cross_entropy', 'square_error_cost', 'accuracy', 'chunk_eval', 'sequence_conv', 'conv2d', 'sequence_pool', 'pool2d', - 'batch_norm', 'beam_search_decode', 'conv2d_transpose', 'lstm_unit' + 'batch_norm', 'beam_search_decode', 'conv2d_transpose', 'sequence_expand', + 'lstm_unit' ] @@ -793,6 +794,73 @@ def conv2d_transpose(input, return out +def sequence_expand(x, y, main_program=None, startup_program=None): + """Sequence Expand Layer. This layer will expand the input variable **x** + according to LoD information of **y**. And the following examples will + explain how sequence_expand works: + + .. code-block:: text + + * Case 1 + x is a LoDTensor: + x.lod = [[0, 2, 3], + [0, 1, 3, 4]] + x.data = [a, b, c, d] + x.dims = [4, 1] + + y is a LoDTensor: + y.lod = [[0, 2, 4], + [0, 3, 6, 7, 8]] + + with condition len(y.lod[-1]) - 1 == x.dims[0] + + then output is a 2-level LoDTensor: + out.lod = [[0, 2, 4], + [0, 3, 6, 7, 8]] + out.data = [a, a, a, b, b, b, c, d] + out.dims = [8, 1] + + * Case 2 + x is a Tensor: + x.data = [a, b, c] + x.dims = [3, 1] + + y is a LoDTensor: + y.lod = [[0, 2, 3, 6]] + + with condition len(y.lod[-1]) - 1 == x.dims[0] + + then output is a 1-level LoDTensor: + out.lod = [[0, 2, 3, 6]] + out.data = [a, a, b, c, c, c] + out.dims = [6, 1] + + Args: + x (Variable): The input variable which is a Tensor or LoDTensor. + y (Variable): The input variable which is a LoDTensor. + main_program (Program): The main program. + startup_program (Program): The startup program. + + Returns: + Variable: The expanded variable which is a LoDTensor. + + Examples: + .. code-block:: python + + x = fluid.layers.data(name='x', shape=[10], dtype='float32') + y = fluid.layers.data(name='y', shape=[10, 20], + dtype='float32', lod_level=1) + out = layers.sequence_expand(x=x, y=y) + """ + helper = LayerHelper('sequence_expand', input=x, **locals()) + dtype = helper.input_dtype() + tmp = helper.create_tmp_variable(dtype) + helper.append_op( + type='sequence_expand', inputs={'X': x, + 'Y': y}, outputs={'Out': tmp}) + return tmp + + def lstm_unit(x_t, hidden_t_prev, cell_t_prev, diff --git a/python/paddle/v2/fluid/tests/test_layers.py b/python/paddle/v2/fluid/tests/test_layers.py index 468bd41285526cfc14e24529b42960fbf297dadf..7b56ae464c633dd3603488befd25dacb297515ba 100644 --- a/python/paddle/v2/fluid/tests/test_layers.py +++ b/python/paddle/v2/fluid/tests/test_layers.py @@ -161,6 +161,15 @@ class TestBook(unittest.TestCase): x=dat, label=lbl)) print(str(program)) + def test_seq_expand(self): + program = Program() + with program_guard(program): + x = layers.data(name='x', shape=[10], dtype='float32') + y = layers.data( + name='y', shape=[10, 20], dtype='float32', lod_level=1) + self.assertIsNotNone(layers.sequence_expand(x=x, y=y)) + print(str(program)) + def test_lstm_unit(self): program = Program() with program_guard(program): diff --git a/python/paddle/v2/fluid/tests/test_seq_expand.py b/python/paddle/v2/fluid/tests/test_sequence_expand.py similarity index 89% rename from python/paddle/v2/fluid/tests/test_seq_expand.py rename to python/paddle/v2/fluid/tests/test_sequence_expand.py index ff17edd04bfd34ab8449a0ae05aacf66632dabc8..0f22612d3dbe483e4d5a8638636e44e172160156 100644 --- a/python/paddle/v2/fluid/tests/test_seq_expand.py +++ b/python/paddle/v2/fluid/tests/test_sequence_expand.py @@ -3,7 +3,7 @@ import numpy as np from op_test import OpTest -class TestSeqExpand(OpTest): +class TestSequenceExpand(OpTest): def set_data(self): x_data = np.random.uniform(0.1, 1, [3, 1]).astype('float32') y_data = np.random.uniform(0.1, 1, [8, 1]).astype('float32') @@ -21,7 +21,7 @@ class TestSeqExpand(OpTest): self.outputs = {'Out': out} def setUp(self): - self.op_type = 'seq_expand' + self.op_type = 'sequence_expand' self.set_data() self.compute() @@ -32,7 +32,7 @@ class TestSeqExpand(OpTest): self.check_grad(["X"], "Out") -class TestSeqExpandCase1(TestSeqExpand): +class TestSequenceExpandCase1(TestSequenceExpand): def set_data(self): x_data = np.random.uniform(0.1, 1, [5, 1]).astype('float32') x_lod = [[0, 2, 5]] @@ -41,7 +41,7 @@ class TestSeqExpandCase1(TestSeqExpand): self.inputs = {'X': (x_data, x_lod), 'Y': (y_data, y_lod)} -class TestSeqExpandCase2(TestSeqExpand): +class TestSequenceExpandCase2(TestSequenceExpand): def set_data(self): x_data = np.random.uniform(0.1, 1, [1, 2, 2]).astype('float32') x_lod = [[0, 1]] @@ -50,7 +50,7 @@ class TestSeqExpandCase2(TestSeqExpand): self.inputs = {'X': (x_data, x_lod), 'Y': (y_data, y_lod)} -class TestSeqExpandCase3(TestSeqExpand): +class TestSequenceExpandCase3(TestSequenceExpand): def set_data(self): x_data = np.random.uniform(0.1, 1, [4, 1]).astype('float32') x_lod = [[0, 1, 2, 3, 4]]